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Gary D. Bader works on biological network analysis and pathway information resources.
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Gary D. Bader works on biological network analysis and pathway information resources.
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RESEARCH
BIOGRAPHY
KEY PUBLICATIONS
INTELLECTUAL PROPERTY
Research
We study the organization and evolution of biological systems using computational biology and bioinformatics techniques. We seek to accurately predict links, such as specific molecular interactions, in eukaryotic cell signaling systems using comprehensive genomics data like genome sequence and transcript profiles. We are interested to find how these links are rewired by mutations to cause disease. This work is supported through the development of open-source biological pathway and network databases and visualization and analysis software.
Researcher Information
Assistant Professor
Banting and Best Department of Medical Research
Website
Donnelly CCBR
160 College St. #602
Toronto, Ontario
Canada M5S3E1
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Biography
Gary D. Bader works on biological network analysis and pathway information resources as an Assistant Professor at the Terrence Donnelly Centre for Cellular and Biomolecular Research (CCBR) at the University of Toronto. He recently completed post-doctoral work in the group of Chris Sander in the Computational Biology Center (cBio) at Memorial Sloan-Kettering Cancer Center in New York. Gary developed the Biomolecular Interaction Network Database (BIND) during his Ph.D. in the lab of Christopher Hogue in the Department of Biochemistry at the University of Toronto and the Samuel Lunenfeld Research Institute at Mount Sinai Hospital in Toronto. He completed a B.Sc. in Biochemistry at McGill University in Montreal.
Researcher Information
Assistant Professor
Banting and Best Department of Medical Research
Website
Donnelly CCBR
160 College St. #602
Toronto, Ontario
Canada M5S3E1


Key Publications
Tong AH, Drees B, Nardelli G, Bader GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi S, Quondam M, Zucconi A, Hogue CW, Fields S, Boone C, Cesareni G A Combined Experimental and Computational Strategy to Define Protein Interaction Networks for Peptide Recognition Modules Science 2002 Jan 11;295(5553):321-324
Bader GD, Hogue CW Analyzing yeast protein–protein interaction data obtained from different sources Nature Biotechnology 2002 Oct;20(10):991-997
Bader GD, Hogue CWV An automated method for finding molecular complexes in large protein interaction networks BMC Bioinformatics 2003 Jan 13;4(1):2
Mathew JP, Taylor BS, Bader GD, Pyarajan S, Antoniotti M, Chinnaiyan AM, Sander C, Burakoff SJ, Mishra B From bytes to bedside: data integration and computational biology for translational cancer research PLoS Comput Biol. 2007 Feb 23;3(2):e12
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD Integration of biological networks and gene expression data using Cytoscape Nat Protoc. 2007;2(10):2366-82
Researcher Information
Assistant Professor
Banting and Best Department of Medical Research
Website
Donnelly CCBR
160 College St. #602
Toronto, Ontario
Canada M5S3E1


Intellectual Property

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CATEGORIES
Application Area
Human health
Disciplinary Focus
Clinical science, Experimental biology and chemistry, Informatics, theoretical biology and computer science
Research Paradigm
Large-scale projects, Technology development
Core Technology
Proteins: Mass spectrometry, Protein chips, Protein-protein interaction assays
Organism
Human, Micro-organism, Nematode and worm, Rodent
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